HDF5 - Revision history

Chipster19 at 15:54, 24 December 2009

2009-12-24T15:54:18Z

← Older revision		Revision as of 15:54, 24 December 2009
Line 8:		Line 8:
	----		----

	{{Package-Introduction\|HDF5 is a general purpose library and file format for storing scientific data. HDF5 stores two primary objects: datasets and groups. A dataset is a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. The internal structure of an HDF5 file is very similar to the filesystem hierarchy.\|http://~~hdf~~.~~ncsa.uiuc.edu~~/HDF5}}		{{Package-Introduction\|HDF5 is a general purpose library and file format for storing scientific data. HDF5 stores two primary objects: datasets and groups. A dataset is a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. The internal structure of an HDF5 file is very similar to the filesystem hierarchy.\|http://hdfgroup.org/HDF5/}}

	== Dependencies ==		== Dependencies ==

Xep at 23:02, 27 November 2008

2008-11-27T23:02:39Z

← Older revision		Revision as of 23:02, 27 November 2008
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	\|-		\|-
	!Download Source:		!Download Source:
	\|ftp://~~hdf~~.~~ncsa~~.~~uiuc.edu~~/HDF5/~~hdf5-{{HDF5-Version}}~~/src/hdf5-{{HDF5-Version}}.tar.gz		\|ftp://ftp.hdfgroup.org/HDF5/current/src/hdf5-{{HDF5-Version}}.tar.gz
	\|-
	~~!Optional patch:~~
	~~\|http://svn.cross-lfs.org/svn/repos/patches/hdf5/hdf5-{{HDF5-Version}}-gcc4.3-1.patch~~
	\|-		\|-
	\|}		\|}
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	== Non-Multilib ==		== Non-Multilib ==

	~~If you have gcc4.3, apply this patch :~~

	~~patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch~~

	Compile the package:		Compile the package:
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	=== 32Bit ===		=== 32Bit ===

	~~If you have gcc4.3, apply this patch :~~

	~~patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch~~

	Compile the package:		Compile the package:
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	=== N32 ===		=== N32 ===

	~~If you have gcc4.3, apply this patch :~~

	~~patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch~~

	Compile the package:		Compile the package:
Line 98:		Line 83:

	=== 64Bit ===		=== 64Bit ===

	~~If you have gcc4.3, apply this patch :~~

	~~patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch~~

	Compile the package:		Compile the package:

Weibullguy at 18:24, 18 August 2008

2008-08-18T18:24:15Z

← Older revision		Revision as of 18:24, 18 August 2008
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	\|Extracts user block from 'h5_file' into 'user_block_file' and HDF5 file into 'h5_file_out'.		\|Extracts user block from 'h5_file' into 'user_block_file' and HDF5 file into 'h5_file_out'.
	\|}		\|}

			[[Category:Science_Engineering]]

Chipster19 at 18:57, 1 May 2008

2008-05-01T18:57:12Z

← Older revision		Revision as of 18:57, 1 May 2008
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	!Download Source:		!Download Source:
	\|ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-{{HDF5-Version}}/src/hdf5-{{HDF5-Version}}.tar.gz		\|ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-{{HDF5-Version}}/src/hdf5-{{HDF5-Version}}.tar.gz
			\|-
			!Optional patch:
			\|http://svn.cross-lfs.org/svn/repos/patches/hdf5/hdf5-{{HDF5-Version}}-gcc4.3-1.patch
	\|-		\|-
	\|}		\|}
Line 43:		Line 46:

	== Non-Multilib ==		== Non-Multilib ==

			If you have gcc4.3, apply this patch :

			patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch

	Compile the package:		Compile the package:
Line 59:		Line 66:

	=== 32Bit ===		=== 32Bit ===

			If you have gcc4.3, apply this patch :

			patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch

	Compile the package:		Compile the package:
Line 71:		Line 82:

	=== N32 ===		=== N32 ===

			If you have gcc4.3, apply this patch :

			patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch

	Compile the package:		Compile the package:
Line 83:		Line 98:

	=== 64Bit ===		=== 64Bit ===

			If you have gcc4.3, apply this patch :

			patch -Np1 -i ../hdf5-{{HDF5-Version}}-gcc4.3-1.patch

	Compile the package:		Compile the package:

Weibullguy: Added parallel build configuration info

2008-02-25T14:41:17Z

Added parallel build configuration info

← Older revision		Revision as of 14:41, 25 February 2008
Line 33:		Line 33:
	\|<i>--enable-parallel:</i> Enable MPI-IO and MPI support.		\|<i>--enable-parallel:</i> Enable MPI-IO and MPI support.
	\|}		\|}

			=== Parallel Support ===

			If building HDF5 with parallel support, you must build [[MPICH2]] with FORTRAN enabled and use the MPI C and FORTRAN compilers to build HDF5. In this case, set the compilers as follows for both Non-Multilib and Multilib builds. Obviously you will need to replace the ${BUILD32} as appropriate.

			F9X=mpif77 CC="mpicc ${BUILD32}"

			You will also need to add the --disable-cxx option in place of --enable-cxx when executing the configure script.

	== Non-Multilib ==		== Non-Multilib ==

	Compile the package:		Compile the package:

	F9X=gfortran ./configure --prefix=/usr --sysconfdir=/etc \		F9X=gfortran ./configure --prefix=/usr --sysconfdir=/etc \
	--enable-fortran --enable-cxx &&		--enable-fortran --enable-cxx &&

Weibullguy: /* Optional */

2007-11-07T18:25:57Z

Optional

← Older revision		Revision as of 18:25, 7 November 2007
Line 14:		Line 14:
	=== Optional ===		=== Optional ===
	* [[OpenSSL]]		* [[OpenSSL]]
	* [[~~MPICH~~]] Required for parallel HDF support.		* [[MPICH2]] Required for parallel HDF support.

	== Configuration Information ==		== Configuration Information ==

Weibullguy at 20:54, 16 April 2007

2007-04-16T20:54:14Z

← Older revision		Revision as of 20:54, 16 April 2007
Line 6:		Line 6:
	\|}		\|}

	~~== Introduction to HDF5 ==~~		----
	HDF5 is a general purpose library and file format for storing scientific data. HDF5 stores two primary objects: datasets and groups. A dataset is a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. The internal structure of an HDF5 file is very similar to the filesystem hierarchy.

	~~<b>Homepage~~:~~</b>~~ http://hdf.ncsa.uiuc.edu/HDF5		{{Package-Introduction\|HDF5 is a general purpose library and file format for storing scientific data. HDF5 stores two primary objects: datasets and groups. A dataset is a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. The internal structure of an HDF5 file is very similar to the filesystem hierarchy.\|http://hdf.ncsa.uiuc.edu/HDF5}}

	== Dependencies ==		== Dependencies ==

Weibullguy: Added multilib and contents.

2007-02-09T02:14:39Z

Added multilib and contents.

← Older revision		Revision as of 02:14, 9 February 2007
Line 14:		Line 14:

	=== Optional ===		=== Optional ===
			* [[OpenSSL]]
	*[[OpenSSL]]		* [[MPICH]] Required for parallel HDF support.
	*[[MPICH]] Required for parallel HDF support.

	== Configuration Information ==		== Configuration Information ==
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	=== 32Bit ===		=== 32Bit ===

	~~To do ..~~.		Compile the package:

			CC="gcc ${BUILD32}" PKG_CONFIG_PATH="${PKG_CONFIG_PATH32}" F9X=gfortran \
			./configure --prefix=/usr --sysconfdir=/etc --enable-fortran --enable-cxx &&
			make

			Install the package:

			make install

	=== N32 ===		=== N32 ===

	~~To do ..~~.		Compile the package:

			CC="gcc ${BUILDN32}" PKG_CONFIG_PATH="${PKG_CONFIG_PATHN32}" F9X=gfortran \
			./configure --prefix=/usr --libdir=/usr/lib32 --sysconfdir=/etc --enable-fortran --enable-cxx &&
			make

			Install the package:

			make install

	=== 64Bit ===		=== 64Bit ===

	~~To do ...~~		Compile the package:

	== ~~Configuring~~ ==		CC="gcc ${BUILD64}" PKG_CONFIG_PATH="${PKG_CONFIG_PATH64}" F9X=gfortran \
			./configure --prefix=/usr --libdir=/usr/lib64 --sysconfdir=/etc --enable-fortran --enable-cxx &&
			make

			Install the package:

			make install

			Install the documentation:

			make install-doc

	== Contents ==		== Contents ==

	{\| style="text-align: left;"		{\|style="text-align: left"
	\|-valign="top"		\|-valign="top"
	!Installed Directories:		!Installed Directories:
	\|/usr/doc/hdf5		\|/usr/share/doc/hdf5, /usr/share/doc/hdf5/examples, /usr/share/doc/hdf5/examples/fortran, /usr/share/doc/hdf5/examples/c++, /usr/share/doc/hdf5/examples/c
	\|-valign="top"		\|-valign="top"
	!Installed Programs:		!Installed Programs:
	\|~~h5c++~~, h5cc, ~~h5fc~~, ~~h5debug~~, ~~h5diff~~, ~~h5dump~~, h5import, h5jam, ~~h5ls~~, ~~h5repack~~, ~~h5unjam~~		\|h5dump, h5diff, h5ls, h5cc, h5debug, h5redeploy, h5repart, gif2h5, h52gif, h5import, h5repack, h5jam, h5unjam, h5fc, h5c++, h5perf
	\|-valign="top"		\|-valign="top"
	!Installed Libraries:		!Installed Libraries:
	\|libhdf5.{a,so}, ~~libhdf5_cpp~~.{a,~~so}~~, libhdf5_fortran.{a,~~so}~~, ~~libhdf5_hl~~.{a,~~so}~~,		\|libhdf5.so, libhdf5.la, libhdf5.a, libhdf5_hl.so, libhdf5_hl.la, libhdf5_hl.a, libhdf5_fortran.la, libhdf5_fortran.a, libhdf5_cpp.la, libhdf5_cpp.a, libhdf5_cpp.la, libhdf5_cpp.a
			\|-valign="top"
			!Symlinks:
			\|None
	\|}		\|}

Weibullguy at 16:19, 16 January 2007

2007-01-16T16:19:15Z

← Older revision		Revision as of 16:19, 16 January 2007
Line 39:		Line 39:

	Compile the package:		Compile the package:
	F9X=gfortran ./configure --prefix=/usr --sysconfdir=/etc --enable-fortran --enable-cxx &&		F9X=gfortran ./configure --prefix=/usr --sysconfdir=/etc \
			--enable-fortran --enable-cxx &&
	make		make

Weibullguy: Version template.

2006-12-29T01:46:08Z

Version template.

← Older revision		Revision as of 01:46, 29 December 2006
Line 2:		Line 2:
	\|-		\|-
	!Download Source:		!Download Source:
	\|ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-~~1.6.5~~/src/hdf5-~~1.6.5~~.tar.gz		\|ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-{{HDF5-Version}}/src/hdf5-{{HDF5-Version}}.tar.gz
	\|-		\|-
	\|}		\|}